UniFrac in QIIME
It is not in the standard tutorial menu, so search for it in the Quick Search box of the Qiime website
If you have two .fna and .qual files that you want to combine and you have the same barcodes for both data sets do the following:
Repeat with the second .fna file but be sure to use a different letter than G
Apply the same correction to the barcodes in your mapping files.
WITH ZEROS for beetle without bacteria – didn’t work, the ones without bacteria drive all patterns
(c) 2013 Ambrosia Symbiosis Lab Protocols